GO-Elite is freely available for download or as a web-based resource. " GO-Elite is an application designed to identify a non-redundant set of ontology (e.g., Gene Ontology ) terms, gene sets (e.g., transcription factor targets) and pathways (e.g., WikiPathways ) to describe a particular set of genes or metabolites." G:GOSt is freely available as a web-based resource. It maps genes to known functional information sources and detects statistically significantly enriched terms." "g:GOSt performs functional enrichment analysis, also known as over-representation analysis (ORA) or gene set enrichment analysis, on input gene list. Besides, the results of the analysis can be depicted graphically in the form of Venn, Bar, Column, Pie and Doughnut charts."įunRich is freely available for download. "FunRich is a stand-alone software tool used mainly for functional enrichment and interaction network analysis of genes and proteins. BMC Bioinformatics 2013)Įnrichr is freely available as a web-based resource. " This tool suite, introduced in the first version of DAVID, mainly provides typical batch annotation and gene-GO term enrichment analysis to highlight the most relevant GO terms associated with a given gene list."ĭAVID is freely available as a web-based resource.Įnrichr is "an integrative web-based and mobile software application that includes new gene-set libraries, an alternative approach to rank enriched terms, and various interactive visualization approaches to display enrichment results.". " ClueGO is a Cytoscape plug-in that visualizes the non-redundant biological terms for large clusters of genes in a functionally grouped network." I am very grateful for any assistance in keeping this list of free resources up to date. The content on this page has been contributed to with help from UCSF colleagues (special thanks to Dr. If you find additional free resources that you think should be listed here, please email Karla Lindquist. Many other pathway/enrichment and network analysis software programs such as Ingenuity Pathway Analysis (IPA) are available at cost to individual labs and researchers (UCSF no longer maintains an institutional agreement with IPA).
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